PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_34259.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30353.9 Da    PI: 7.668
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_34259.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF627e-201864349
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           i+  +n qvtf+kRr+gi+KKA+E+S+L +ae+aviifs+  k++ +
  evm.TU.contig_34259.1 18 IKKATNLQVTFAKRRAGIFKKASEISTLYGAEIAVIIFSPAKKVFFF 64
                           8999*************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-22867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.899868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-231094IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-141030IPR002100Transcription factor, MADS-box
PfamPF003196.5E-201763IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-143045IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-144566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEPPKKLKGH QMIEMVKIKK ATNLQVTFAK RRAGIFKKAS EISTLYGAEI AVIIFSPAKK  60
VFFFVSPSVE KLINRFSGLI EQHHSANRYD MNLSQLQQFQ AALEELYENV IKVAKENDAE  120
ENNINPNSDD QLFLGSSSNG TGLPFESIPL NAIGCPRNMV NPNMNRVNSN KVNPNVISPS  180
MINPNMVNPA AYMKMLRDML NNNNPNIPLS NSMIPNNPNM VSNVMPISSN PTNMMLLAAN  240
LMINNDQNLV LADHMMMNND QNMMVGGSDA IND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_34259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386370.0AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912041.11e-163myocyte-specific enhancer factor 2A-like
TrEMBLA0A438JMZ72e-28A0A438JMZ7_VITVI; Agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_34259.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-26AGAMOUS-like 62