PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_33091.3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12192.3 Da    PI: 10.2104
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_33091.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +n++n qvtfskRr+g+ KKA+E S+LC++++a+iifs++ k + +
                           58**************************************9987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-27665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.586666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23780IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-17828IPR002100Transcription factor, MADS-box
PfamPF003192.0E-211662IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
3D Structure ? help Back to Top
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-16792186Myocyte-specific enhancer factor 2A
3kov_B1e-16792186Myocyte-specific enhancer factor 2A
3kov_I1e-16792186Myocyte-specific enhancer factor 2A
3kov_J1e-16792186Myocyte-specific enhancer factor 2A
3p57_A1e-16792186Myocyte-specific enhancer factor 2A
3p57_B1e-16792186Myocyte-specific enhancer factor 2A
3p57_C1e-16792186Myocyte-specific enhancer factor 2A
3p57_D1e-16792186Myocyte-specific enhancer factor 2A
3p57_I1e-16792186Myocyte-specific enhancer factor 2A
3p57_J1e-16792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385901e-176AC238590.1 Carica papaya BAC clone 12I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902615.18e-70LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL23
RefseqXP_021911064.11e-70agamous-like MADS-box protein AGL62
SwissprotQ9FKK25e-39AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLB9IJA61e-45B9IJA6_POPTR; Uncharacterized protein
STRINGevm.TU.contig_33091.33e-75(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-41AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299