PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_30912.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 201aa    MW: 21923.8 Da    PI: 9.1476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_30912.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00184668123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C++ F++   L  H  +H
  evm.TU.contig_30912.1 46 FECKTCNRQFPSFQALGGHRASH 68
                           89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.58E-94468No hitNo description
PfamPF139123.5E-134570IPR007087Zinc finger, C2H2
SMARTSM003550.164668IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576678.58E-9101128No hitNo description
PfamPF139129.6E-10105130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66106133IPR007087Zinc finger, C2H2
SMARTSM003550.5106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKRSNLQGGV GELDSLTMAN CLMLLSQGGN FYEGSTMAAA NPIRVFECKT CNRQFPSFQA  60
LGGHRASHKK PRLMPTTTEE GSGNTADKDS TASLSSSSSP AKPKTHECSI CGLEFAIGQA  120
LGGHMRRHRG GGSSRNETTI AGHHHHHQPL PAPRDFDNKT LVKRSNSRRV LWLDLNLTPM  180
ENDLELFKLQ KTSPMVDCFF *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027131.12e-69PREDICTED: zinc finger protein ZAT11-like
TrEMBLG8IEK94e-71G8IEK9_POPTR; C2H2-type zinc finger protein 1
STRINGPOPTR_0010s21650.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-25C2H2 family protein