PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_25253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 105aa    MW: 12366.4 Da    PI: 10.0783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_25253.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.32e-181150342
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           i n+s r+ tf kR+n ++KKA+ELS+LCd++++ ii+s+
  evm.TU.contig_25253.1 11 ITNNSARNATFKKRKNELMKKASELSTLCDIKACEIIYSP 50
                           89************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.273149IPR002100Transcription factor, MADS-box
CDDcd002662.18E-26285No hitNo description
SuperFamilySSF554555.49E-20293IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MTRKNVNLAY ITNNSARNAT FKKRKNELMK KASELSTLCD IKACEIIYSP YDLQPDLWFF  60
PLRAQHVLVD FKRMPEMEQS KKMVHQESFM HQRMRFVDGM NPHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_25253.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911963.11e-64agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-27AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0A0LVS35e-39A0A0A0LVS3_CUCSA; Uncharacterized protein
TrEMBLU5GF697e-39U5GF69_POPTR; Uncharacterized protein
STRINGevm.TU.contig_25253.15e-74(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-29AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]