PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_24748.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 398aa    MW: 43974.4 Da    PI: 4.3169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_24748.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-132064246
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           + en+   qvt+sk r  ++KK +EL++LC  +v +i+fs+ ++ 
  evm.TU.contig_24748.2 20 KMENEASLQVTLSKHRSSLFKKVSELCTLCRPDVGLIVFSPGNRA 64
                           6799999*********************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-181170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.9931171IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-191285IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-131333IPR002100Transcription factor, MADS-box
PfamPF003192.5E-162067IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-133348IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-134869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEDEGTSSKS KGRQKIESKK MENEASLQVT LSKHRSSLFK KVSELCTLCR PDVGLIVFSP  60
GNRAFCYGNR NIDIVIDRFL SIDVRPTRDP DNENDTQQII SRITEAQDKE EAARKRGKEL  120
KQRRKGLMKE LWYTRSMDKF NLEELEVLDA CMKALWNDVA ELAKKEQGNS SSAEGSPRDD  180
GMFYSDPAMK ALTTLPMPSM PSNPTHEYAP SSTNSTPPLS SFCNLDSGKP NIMMMDNPLN  240
DSSMALDPVD DLKAMPRDLF NNLVMIESDD PIAALNVGDN PDIMSNAFRN QIATMDINLS  300
NDPNIGPNEF FNPSTMSHAP NDPISTTSDA LNMIRIVPDD SNLDSVFDGF TLEMLFADPL  360
DDENFIVDNL NEAVNGDNPK TMPPPLAGNV LGSGQGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_24748.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_24748.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-29AGAMOUS-like 62