PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_70223
Common NameCHLNCDRAFT_57554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family G2-like
Protein Properties Length: 525aa    MW: 55688.1 Da    PI: 10.8321
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_70223genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.62.7e-082273453
                     G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelm..kvkgLtlehvkSHLQkY 53
                                l+Wt+   e++  a+eq GG e A Pk++l+ m  + ++Ltl+ vk  L  +
  estExt_fgenesh3_pg.C_70223 22 LKWTTRVEEAYEAALEQVGGLEAAKPKSVLDQMrgEFPSLTLQSVKWKLLAH 73
                                89*******************************444789******9777655 PP

2G2-like28.34e-0992144454
                     G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelm..kvkgLtlehvkSHLQkYR 54 
                                  +W+  L e +  av++LGG + A Pk++le++  + +++tl+ vk H Qk R
  estExt_fgenesh3_pg.C_70223  92 TKWAGRLEEVYEAAVARLGGLQAARPKALLEALlpEFPSMTLQVVKGHVQKQR 144
                                 68*****************************8866899*************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-72278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-792149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGDSVGGLEE VPPASSGPGR TLKWTTRVEE AYEAALEQVG GLEAAKPKSV LDQMRGEFPS  60
LTLQSVKWKL LAHRRRVERH RVMEPAGITP PTKWAGRLEE VYEAAVARLG GLQAARPKAL  120
LEALLPEFPS MTLQVVKGHV QKQRRRVQRQ QQPEGSGSAD GGAQATPPHG SPSVAAAMAA  180
AASAGAAGGS ATTASSMQVD SFGVGAVSAV QQLIEEPSEG QLRLPQQQQQ QQQPHMPRPQ  240
RHRQQPQQQQ QQPGDEPQRQ QPSLLPEPQR HALPLAAPPW QPYLPPAAQR AAARASRAAL  300
LCRQMVVLLQ QNEERLARLL QALEQRQRRE AALSGLAGLG TSGGGGGSSL SSVVAELTPD  360
LQRVLEWLLP RGMAAAAASR CDSSGSGSGS GGGVGSGPAL PLRPRPLPAR ASRQQRNLAE  420
IAGSFTLLPQ HTVPPQGSRH DAATCAAPAC PVCAYERRLQ RSREQRDVAP LPPDARSPQQ  480
QQHHQGTGGT SSGIPRILPV AGPPTRVLAE LLQIPQALMQ PPPH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848990.10.0expressed protein
TrEMBLE1ZBN80.0E1ZBN8_CHLVA; Expressed protein
STRINGXP_005848990.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]