PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_42_00024
Common NameCHLNCDRAFT_142555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 938aa    MW: 96687.1 Da    PI: 11.4138
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_42_00024genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.17e-11368415255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++kGV++ + +grW+A+  +   +  +k +++g f+ +eeAa+a + a+ +++g
  IGS.gm_42_00024 368 KFKGVYRMP-TGRWRAQFTH---R--NKVIQIGMFDGEEEAARAWDMAAVQYRG 415
                      79*******.9******444...3..5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-5368429IPR001471AP2/ERF domain
PROSITE profilePS5103214.552368423IPR001471AP2/ERF domain
PfamPF008471.8E-7368415IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-12368425IPR016177DNA-binding domain
CDDcd000181.46E-10368425No hitNo description
Gene3DG3DSA:3.30.730.101.0E-10368424IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MATPAAAAAA PRAGAGGMRD SAAPLEPILR ALQMLGARSQ QQVEGQEQPR APRAPVPAHL  60
RLPTLPAQLL PANRAAFGAP NGSTTRPAGA ATITTGRVGG APAGGGGGAL LSPRGPAAAA  120
PVLFTASPVL ILPTQQVCLL QAQEQVQSQH RGHQSHPNPR SAAAQAPRTR NSGGASALRR  180
QQQQQRQRQQ QQLQLQAQQP PPPQPPQRQQ PDAPTVAAAG SAAGAAMAAG GADVGPLFVA  240
AQGRAPFQYV FGSSMQVRQP PPAPPAVEPR AIKPSPATTP PSSPAYAHRQ KQPEGPGEQQ  300
AAPPRQPQPP QQDGEGQAAG EDSKGDEGAA AAAAGQQDEQ ARGEFAPFAV RSPPTDDGAK  360
PFSMRSMKFK GVYRMPTGRW RAQFTHRNKV IQIGMFDGEE EAARAWDMAA VQYRGAATKI  420
NIPVSQATIQ EWLKDKPVGW SFFYDDNDQP LPQPLAGQAL LQKQKELQLK QAKEQQAKEQ  480
QAGKADTTDA NKKGKKEPSA GTAAAQGSEA GKAPASQAPP AARPGAAAPL RAAASPCAAA  540
APAPAAASQP SSPRAAAGAA RPAAAASTAK PSIVEPASLP AGSIPLLIST PVAEGIVQLP  600
GPVHIVQASP PALRLARAPA AVPAPQRLQP QPPFQSLPLP AAHRYMPGNQ RGHQSVTTGS  660
LLPGAHTVPM PVMVQKRQMS PTAVPGAASV PYAVQMPRQQ PLRGSQPHLP QQQQQQQQPQ  720
QNGPARPRAA AAKRQRAAAQ AAASLLEDVL SPVVPSATTK EDRALRAARR SAAAEERSAA  780
SEAASTQHPR RSLAGSLIAA AEAVEEAEAA AEVAAAAMAL QKLPRLTINT SRVQPVTEPG  840
AAALGSALQH LNGGISPMAV TTLHPGSPTA TTPHSPGSAR PPHRQRKKPA HASPDLLPSP  900
WDLPVERLHS LSPPPHGDLG RGGGTKRQRT GSPPGVH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005842844.10.0hypothetical protein CHLNCDRAFT_142555
TrEMBLE1ZTW10.0E1ZTW1_CHLVA; Uncharacterized protein
STRINGXP_005842844.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP975144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-09ERF family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]