PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 97aa    MW: 10861.3 Da    PI: 10.7392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.12e-24118851127
                                               NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfyk 110
                                                       +k+++ ew+fFs+rd k+++++r+nrat+sg Wk tgkd++++++ +++++g+ ktLvfy 
  snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1  11 IKSDDPEWFFFSPRDFKNSNSNRRNRATQSGCWKVTGKDRKIKARgTNNVIGTMKTLVFYG 71 
                                                       567888**************************************967778*********** PP

                                               NAM 111 grapkgektdWvmheyr 127
                                                       gr   g++t+ vmhey+
  snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1  72 GRVGGGVRTNGVMHEYH 88 
                                                       ****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.609197IPR003441NAC domain
SuperFamilySSF1019412.09E-261192IPR003441NAC domain
PfamPF023651.5E-131588IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MLPGCAEFSV IKSDDPEWFF FSPRDFKNSN SNRRNRATQS GCWKVTGKDR KIKARGTNNV  60
IGTMKTLVFY GGRVGGGVRT NGVMHEYHPT VTLPHQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-18178770138Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076GGRVGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885011.15e-46protein NTM1-like 9
RefseqXP_023894735.15e-46protein NTM1-like 9
SwissprotF4JN356e-29NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2N9H8V12e-41A0A2N9H8V1_FAGSY; Uncharacterized protein
STRINGPOPTR_0014s10350.13e-30(Populus trichocarpa)
STRINGAES844727e-30(Medicago truncatula)
STRINGAES846217e-30(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-27NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]