PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 115aa    MW: 13133.2 Da    PI: 10.548
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.39.9e-26169451128
                                               NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfyk 110
                                                       +  +e+ewyfFs+r++ky +g r+nrat+sgy ka g+dk++l++ ++e +g+kk Lvfy+
  snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1  16 ALFGEDEWYFFSQRNRKYLNGARPNRATASGYRKANGTDKPILTScRSECIGIKKALVFYT 76 
                                                       334788*************************************9988889*********** PP

                                               NAM 111 grapkgektdWvmheyrl 128
                                                       gr pk++ktdWvm+e rl
  snap_masked-scaffold12800-abinit-gene-0.4-mRNA-1  77 GRPPKAVKTDWVMDENRL 94 
                                                       **************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.4271115IPR003441NAC domain
SuperFamilySSF1019413.79E-261596IPR003441NAC domain
PfamPF023657.4E-111693IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MPNKLLSRLF MPQQKALFGE DEWYFFSQRN RKYLNGARPN RATASGYRKA NGTDKPILTS  60
CRSECIGIKK ALVFYTGRPP KAVKTDWVMD ENRLLDMSIS SRLNGSMRVS GYGCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-321511265157NO APICAL MERISTEM PROTEIN
1ut4_B9e-321511265157NO APICAL MERISTEM PROTEIN
1ut7_A9e-321511265157NO APICAL MERISTEM PROTEIN
1ut7_B9e-321511265157NO APICAL MERISTEM PROTEIN
3swm_A1e-311511268160NAC domain-containing protein 19
3swm_B1e-311511268160NAC domain-containing protein 19
3swm_C1e-311511268160NAC domain-containing protein 19
3swm_D1e-311511268160NAC domain-containing protein 19
3swp_A1e-311511268160NAC domain-containing protein 19
3swp_B1e-311511268160NAC domain-containing protein 19
3swp_C1e-311511268160NAC domain-containing protein 19
3swp_D1e-311511268160NAC domain-containing protein 19
4dul_A9e-321511265157NAC domain-containing protein 19
4dul_B9e-321511265157NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022756099.12e-42NAC domain-containing protein 68-like
RefseqXP_028069678.13e-42NAC domain-containing protein 10-like
SwissprotA0SPJ63e-35NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLA0A2N9HWN82e-48A0A2N9HWN8_FAGSY; Uncharacterized protein
STRINGGLYMA12G29360.15e-41(Glycine max)
STRINGGLYMA13G40251.15e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-37NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]