PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold12617-abinit-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 486aa    MW: 53817.4 Da    PI: 9.1286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold12617-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143252323
                                                      ETTTTEEESSHHHHHHHHHHT CS
                                           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                                      C++C+k F r  nL+ H r H
  snap_masked-scaffold12617-abinit-gene-0.3-mRNA-1 32 CEICNKGFQRDQNLQLHRRGH 52
                                                      *******************88 PP

2zf-C2H211.90.00068106128123
                                                       EEETTTTEEESSHHHHHHHHHHT CS
                                           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                       +kC++C+k +  +s+ k H + +
  snap_masked-scaffold12617-abinit-gene-0.3-mRNA-1 106 WKCEKCSKKYAVQSDWKAHSKIC 128
                                                       58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.9E-72952No hitNo description
Gene3DG3DSA:3.30.160.602.2E-52952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.113052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8243052IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035510071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-494127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.9E-7101126No hitNo description
SMARTSM00355140106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGFLFPPLSE DPDAEVIALS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  60
RTNKEVRKKV YVCPEKSCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD  120
WKAHSKICGT REYKCDCGTL FSRKDSFITH RAFCDALAEE NARFTSVSAV NQNFKHDLIN  180
GTISNPQLAG IPQLPSAFHP EFAGSESVSN LIADGQKPKL PLWLDNAAQL RQIGITNNSN  240
AYLASLPELI PNASMSNMFG STSQMQWLNK YPEASFTSAD LTISSLPRVL KEEQENKGNL  300
SESGVTLYPN NNQNQQTGPG HMSATALLQK AAQIGSTRSN PSFNGTAFGL MCTSHSHVSN  360
SRNEVQKIFR QQNQAGNMNE LLSSFPSSTP NTTVGDGSML VNSNSSSFLQ NTKNLEHWLM  420
SNNGKHDQHV PAGKHHASSN EVERSLTRDF LGVGGDASRP FLQQELAKFA SMGSAMDLSH  480
YTSGHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-37102168369Zinc finger protein JACKDAW
5b3h_F2e-37102168369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15668KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927168.10.0protein indeterminate-domain 9-like
RefseqXP_023927169.10.0protein indeterminate-domain 9-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2N9HUZ80.0A0A2N9HUZ8_FAGSY; Uncharacterized protein
STRINGEOY330480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-96indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]