PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 382aa    MW: 41626.5 Da    PI: 6.0073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031631123
                                                      EEET..TTTEEESSHHHHHHHHHH.T CS
                                           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                                                      + C   +C ksF  +s++++Hi+  H
  snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1  6 FICAapHCLKSFLKRSEFESHINEsH 31
                                                      678888****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.85632IPR007087Zinc finger, C2H2
PROSITE patternPS000280831IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMEGIFICAA PHCLKSFLKR SEFESHINES HADLLQPNAE KEDGNESESQ SVKQSGASES  60
TARAPPRPVI SPGSNSQIHD REDKTRRQQP REPPPSRPNV QPKQPQSFGQ VQNHPSELQP  120
DNNRPQGFDR LGPQNRFHQQ GFDTQGGPQQ ESGQFPDKQQ GILSENQFPE YPPMHSLQTP  180
NFAVPVNTNP MLNPPPPFGY PPFQTEGGQP FYGAPYEMTR QDSASEVGAE QGSLLGFPPV  240
QAGGVNFSGN YAQPWNGGGF VGAPFEHPHS GHGMLDGFAN ASDSHGKAAF HQGDYGRNSG  300
GLLLNPPPLA NKGMEQAQSG NAMDPRDGKG ILAPQPMPLP PPPPPPPHQS QLKRKFYPES  360
SRDGQGYGWQ HENRDSYGSG QD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906770.10.0E3 ubiquitin-protein ligase Hakai
TrEMBLA0A2N9EZF10.0A0A2N9EZF1_FAGSY; Uncharacterized protein
STRINGXP_010101828.11e-156(Morus notabilis)