PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold01571-abinit-gene-0.7-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 199aa    MW: 21641.2 Da    PI: 6.2683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold01571-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-163383155
                                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                                      + y+GVr++  +g+WvAeIr+p     +  +r++lg+f t  eAa a++  ++kl g
  snap_masked-scaffold01571-abinit-gene-0.7-mRNA-1 33 CNYRGVRQRT-WGKWVAEIREP-----SlgARHWLGTFNTSIEAALAYDGVARKLCG 83
                                                      56*****999.**********9.....445*******************99999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-103383IPR001471AP2/ERF domain
CDDcd000181.17E-283392No hitNo description
SMARTSM003801.2E-313497IPR001471AP2/ERF domain
PROSITE profilePS5103219.6913491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-283492IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-193492IPR016177DNA-binding domain
PRINTSPR003675.9E-93546IPR001471AP2/ERF domain
PRINTSPR003675.9E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MENEARNVTK KPSMGRSRKG CMRGKGGPEN ALCNYRGVRQ RTWGKWVAEI REPSLGARHW  60
LGTFNTSIEA ALAYDGVARK LCGPSAKLNL PDRSSSSRSS EPVVTSLSMG NNSSSSGSCG  120
SDNGSVKEEE RTFMGDVCRE SLWEGSSVPS LIDELLAGNN FLEVNDSGDP ISGLMVEGEF  180
LEWDTLHCRF HGACKVFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-163496568ATERF1
3gcc_A1e-163496568ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905840.11e-104dehydration-responsive element-binding protein 2D-like
RefseqXP_023913579.11e-104dehydration-responsive element-binding protein 2D-like
TrEMBLA0A438JQU01e-47A0A438JQU0_VITVI; Dehydration-responsive element-binding protein 2G
STRINGXP_006478977.13e-48(Citrus sinensis)
STRINGXP_006443285.13e-48(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-40ERF family protein