PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold27733-snap-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 323aa    MW: 36802.5 Da    PI: 6.0335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold27733-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000423052323
                                              ET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                                              C+   Cgk+F +   L++H   H
  maker-scaffold27733-snap-gene-0.3-mRNA-1 30 CSyeGCGKTFIDAGALRKHSHIH 52
                                              77779**************7766 PP

2zf-C2H216.72e-055781123
                                              EEET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                              y+C+   Cgk F ++s LkrH   H
  maker-scaffold27733-snap-gene-0.3-mRNA-1 57 YVCHyeGCGKKFLDSSKLKRHFLIH 81
                                              9********************8877 PP

3zf-C2H2219.1e-0787111123
                                               EEET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                               + Cp   Cgk Fs   nL++H++tH
  maker-scaffold27733-snap-gene-0.3-mRNA-1  87 FICPheGCGKAFSLDFNLRSHMKTH 111
                                               78**********************9 PP

4zf-C2H2187.8e-06117141123
                                               EEET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                               + Cp  dCgk++ + + Lk+Hi +H
  maker-scaffold27733-snap-gene-0.3-mRNA-1 117 HICPypDCGKRYAHEYKLKNHIASH 141
                                               679999*****************96 PP

5zf-C2H214.10.00014180205123
                                               EEET..TTTEEESSHHHHHHHHHH.T CS
                                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                               y Cp   C k + + + Lk H+r+ H
  maker-scaffold27733-snap-gene-0.3-mRNA-1 180 YACPyeGCEKAYIHEYKLKLHLRReH 205
                                               89**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-142354IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7832857IPR007087Zinc finger, C2H2
SMARTSM003550.00322852IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803052IPR007087Zinc finger, C2H2
SuperFamilySSF576673.18E-83181No hitNo description
Gene3DG3DSA:3.30.160.601.9E-145577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00245781IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.9215786IPR007087Zinc finger, C2H2
PROSITE patternPS0002805981IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-1468121No hitNo description
Gene3DG3DSA:3.30.160.604.9E-2078111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-487111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.59187116IPR007087Zinc finger, C2H2
PROSITE patternPS00028089111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-9112143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028117141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64117147IPR007087Zinc finger, C2H2
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-9174203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-5175203No hitNo description
SMARTSM003550.0089180205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014180210IPR007087Zinc finger, C2H2
PROSITE patternPS000280182205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
ESLKALKEKA KEPEPPEPEP EPTTEVLFLC SYEGCGKTFI DAGALRKHSH IHGERQYVCH  60
YEGCGKKFLD SSKLKRHFLI HTGERDFICP HEGCGKAFSL DFNLRSHMKT HSQENYHICP  120
YPDCGKRYAH EYKLKNHIAS HHEKNVPVDV AKYTPPSEKQ NKAPKPSSGV YASASSDRPY  180
ACPYEGCEKA YIHEYKLKLH LRREHPGHTS DENAENAAAN ADNEMDEASD QDAYVGKRSN  240
GKSQKQSRPK PNLKLPPAKI TQRKGSTPSP APVNVMKKPW PAKEEAYEEE DSEETEEDRD  300
NVEDGWRYAE NNEDDDEETE YED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-35301418119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885432.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-135YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2I4FV750.0A0A2I4FV75_JUGRE; uncharacterized zinc finger protein At4g06634-like isoform X2
STRINGXP_008218753.11e-180(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-122C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]