PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold22384-snap-gene-0.5-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 122aa    MW: 13573 Da    PI: 4.138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold22384-snap-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.44.6e-0962116148
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLp 48 
                                               lp+G++F+Ptd+e++ e+L++k+ +++      ++  e   +++   +i++++P++Lp
  maker-scaffold22384-snap-gene-0.5-mRNA-1  62 LPAGVKFDPTDHEIL-EHLEAKILSDTrklhplID--EfipTLEGEnGICYTHPEKLP 116
                                               799***********9.99****9999956644322..22222333336*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-956119IPR003441NAC domain
PROSITE profilePS5100511.54862122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTWCNDSDDD RALQIITATS KENTNVLDPS KTDDIRNTIT CPSCGQDIEF QDQAGIHDLP  60
GLPAGVKFDP TDHEILEHLE AKILSDTRKL HPLIDEFIPT LEGENGICYT HPEKLPGDSY  120
PN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018854823.13e-70PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-44NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2N9G7P63e-70A0A2N9G7P6_FAGSY; Uncharacterized protein
STRINGVIT_10s0003g00350.t012e-60(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1752645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.16e-47NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]