PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold22344-augustus-gene-0.2-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 264aa    MW: 29759.9 Da    PI: 5.4316
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold22344-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-3082140259
                                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  maker-scaffold22344-augustus-gene-0.2-mRNA-1  82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMLVVTYSCEHNHP 140
                                                   69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-3272142IPR003657WRKY domain
SuperFamilySSF1182902.35E-2679142IPR003657WRKY domain
SMARTSM007741.0E-3581141IPR003657WRKY domain
PROSITE profilePS5081132.29482142IPR003657WRKY domain
PfamPF031064.0E-2683140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEGRFINNPF MSSEQEENDG IPENAAESPP STYFNDMMKI TNSSSSSSPR KSKRAIQKRV  60
VSVPIKDVEG SRQKSESNTP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE  120
RSRADPTMLV VTYSCEHNHP WPAPRNHHNN HSNNHPTVKT EKREIVTSRP DPEPVHEERF  180
ADLGNDDTSS LITTSDEFRW FSDMETTSST ILESPIFAER SAGDSDVAMF FPMGEEDESL  240
YADLGELPEC SVVFRGMGPR VEIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-19821421574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317397.11e-111WRKY transcription factor 65 family protein
SwissprotQ9LP561e-88WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLB9I1H91e-110B9I1H9_POPTR; WRKY transcription factor 65 family protein
STRINGPOPTR_0011s06990.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-87WRKY DNA-binding protein 65