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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold16189-augustus-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 344aa MW: 38637.9 Da PI: 5.1252 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.2 | 2e-29 | 122 | 183 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g++fpr+YYrCt++ gC ++k+v+r++edp+++e+tY+g+H+++ maker-scaffold16189-augustus-gene-0.2-mRNA-1 122 LDDGYSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRCDEDPTIFEVTYRGRHTCS 183 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-29 | 114 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.296 | 117 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-26 | 121 | 184 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-42 | 122 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-27 | 123 | 182 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAMEWEQKTL ISELNQGKEL AKQLMNHLNP SSSHETRECL IEKILSSYEK ALSMINWGAC 60 VGEPKSTINN LESPSSFAIT SPRSEGYEQD SKHKDVYKKR KTLPRWTEQV KVCSGTGLEG 120 PLDDGYSWRK YGQKDILGAN FPRGYYRCTH RHSQGCLATK QVQRCDEDPT IFEVTYRGRH 180 TCSQASHLNV ASASVKENKR KFQPQQQSQE IVFNYGGGLK SEDLEIREDD IFPSFSFPST 240 PIGSENADNN IFSESIMLEN NFMGSFSPTF ISPATSESNL FSLSPCHMNS YGLGHNMQTS 300 ESDLTDIISA PTSVTNSPIG NLDFSLDKVD IDPNFPFDNP EFFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-13 | 122 | 180 | 17 | 72 | Probable WRKY transcription factor 4 |
2lex_A | 4e-13 | 122 | 180 | 17 | 72 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320852.2 | 1e-168 | hypothetical protein POPTR_0014s09190g | ||||
Swissprot | Q9SUP6 | 4e-55 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | B9I8V9 | 1e-168 | B9I8V9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s09190.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-56 | WRKY family protein |