PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold16189-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 344aa    MW: 38637.9 Da    PI: 5.1252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold16189-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.22e-29122183159
                                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                                   ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+r++edp+++e+tY+g+H+++
  maker-scaffold16189-augustus-gene-0.2-mRNA-1 122 LDDGYSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRCDEDPTIFEVTYRGRHTCS 183
                                                   59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-29114184IPR003657WRKY domain
PROSITE profilePS5081123.296117180IPR003657WRKY domain
SuperFamilySSF1182901.96E-26121184IPR003657WRKY domain
SMARTSM007741.4E-42122184IPR003657WRKY domain
PfamPF031064.1E-27123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAMEWEQKTL ISELNQGKEL AKQLMNHLNP SSSHETRECL IEKILSSYEK ALSMINWGAC  60
VGEPKSTINN LESPSSFAIT SPRSEGYEQD SKHKDVYKKR KTLPRWTEQV KVCSGTGLEG  120
PLDDGYSWRK YGQKDILGAN FPRGYYRCTH RHSQGCLATK QVQRCDEDPT IFEVTYRGRH  180
TCSQASHLNV ASASVKENKR KFQPQQQSQE IVFNYGGGLK SEDLEIREDD IFPSFSFPST  240
PIGSENADNN IFSESIMLEN NFMGSFSPTF ISPATSESNL FSLSPCHMNS YGLGHNMQTS  300
ESDLTDIISA PTSVTNSPIG NLDFSLDKVD IDPNFPFDNP EFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-131221801772Probable WRKY transcription factor 4
2lex_A4e-131221801772Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320852.21e-168hypothetical protein POPTR_0014s09190g
SwissprotQ9SUP64e-55WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLB9I8V91e-168B9I8V9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09190.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-56WRKY family protein