PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14402-augustus-gene-0.4-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 243aa    MW: 27939.3 Da    PI: 6.6869
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14402-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.41.8e-4641351128
                                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfF 61 
                                                   lppG+rF Pt+eelv++yL++k+egk+ ++++vi+ + iy++ePw+Lpk    +++a++++w+fF
  maker-scaffold14402-augustus-gene-0.4-mRNA-1   4 LPPGYRFYPTEEELVSFYLHNKLEGKRPDVQRVIPVISIYDIEPWHLPKvsgeMCQADTEQWFFF 68 
                                                   79****************************99****************657765666888***** PP

                                           NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                                                   ++r++++a+g r++r+t+sgyWkatg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+ey
  maker-scaffold14402-augustus-gene-0.4-mRNA-1  69 APRQEREARGGRPSRTTDSGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEY 133
                                                   ***************************************************************** PP

                                           NAM 127 rl 128
                                                   r+
  maker-scaffold14402-augustus-gene-0.4-mRNA-1 134 RA 135
                                                   96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-493161IPR003441NAC domain
PROSITE profilePS5100549.4124162IPR003441NAC domain
PfamPF023652.2E-245134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEQLPPGYRF YPTEEELVSF YLHNKLEGKR PDVQRVIPVI SIYDIEPWHL PKVSGEMCQA  60
DTEQWFFFAP RQEREARGGR PSRTTDSGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA  120
PTGRKTKWKM NEYRAIEEVP SSSSTVVPKL RHEFSLCRVY VVSGSFRAFD RRPEMSTRET  180
PQLGDNRAAT SSQKTTMVEK TSSSETSHSG GDHVDLPEID GFDWGINDGL EQPLWEWEQL  240
NWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-36416017163NO APICAL MERISTEM PROTEIN
1ut4_B7e-36416017163NO APICAL MERISTEM PROTEIN
1ut7_A7e-36416017163NO APICAL MERISTEM PROTEIN
1ut7_B7e-36416017163NO APICAL MERISTEM PROTEIN
3swm_A7e-36416020166NAC domain-containing protein 19
3swm_B7e-36416020166NAC domain-containing protein 19
3swm_C7e-36416020166NAC domain-containing protein 19
3swm_D7e-36416020166NAC domain-containing protein 19
3swp_A7e-36416020166NAC domain-containing protein 19
3swp_B7e-36416020166NAC domain-containing protein 19
3swp_C7e-36416020166NAC domain-containing protein 19
3swp_D7e-36416020166NAC domain-containing protein 19
4dul_A7e-36416017163NAC domain-containing protein 19
4dul_B7e-36416017163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913916.11e-176NAC domain-containing protein 90
SwissprotQ9FMR31e-100NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2N9ISJ31e-159A0A2N9ISJ3_FAGSY; Uncharacterized protein
STRINGcassava4.1_014914m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-101NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]