PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13586-augustus-gene-0.8-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 171aa    MW: 19899.6 Da    PI: 9.2522
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13586-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.49.3e-3991501128
                                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 
                                                   lppG+rF+P+d e++  yLkkk++g++ ++  +i+e++ yk ePwdLp k  +++e++ew+fF++
  maker-scaffold13586-augustus-gene-0.8-mRNA-1   9 LPPGVRFSPKDPEVIELYLKKKITGNDEDT-WFIPEIEFYKDEPWDLPiKsGIATEDQEWFFFTE 72 
                                                   79*************************888.78**************96347777999******* PP

                                           NAM  64 rdkkya...........tgkrknratksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114
                                                   ++ k++           +++r +r+tk+gyWk+tg+d+e++s +++l+g+kktLvf+   ++ ++
  maker-scaffold13586-augustus-gene-0.8-mRNA-1  73 QSLKQQddnpkkrkrdqKQERVSRKTKAGYWKSTGTDREIKS-GESLIGMKKTLVFHigtTKGKE 136
                                                   *999994444433333223355555*****************.999***********76655778 PP

                                           NAM 115 kgektdWvmheyrl 128
                                                   kg  t+Wvmhey+ 
  maker-scaffold13586-augustus-gene-0.8-mRNA-1 137 KGIGTKWVMHEYST 150
                                                   999*********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-406155IPR003441NAC domain
PROSITE profilePS5100539.1859171IPR003441NAC domain
PfamPF023657.9E-2410149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEKLSLDHLP PGVRFSPKDP EVIELYLKKK ITGNDEDTWF IPEIEFYKDE PWDLPIKSGI  60
ATEDQEWFFF TEQSLKQQDD NPKKRKRDQK QERVSRKTKA GYWKSTGTDR EIKSGESLIG  120
MKKTLVFHIG TTKGKEKGIG TKWVMHEYST TQKDFDGKHP GQIVLPPKSL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-26914817140NO APICAL MERISTEM PROTEIN
1ut4_B2e-26914817140NO APICAL MERISTEM PROTEIN
1ut7_A2e-26914817140NO APICAL MERISTEM PROTEIN
1ut7_B2e-26914817140NO APICAL MERISTEM PROTEIN
3swm_A2e-26414815143NAC domain-containing protein 19
3swm_B2e-26414815143NAC domain-containing protein 19
3swm_C2e-26414815143NAC domain-containing protein 19
3swm_D2e-26414815143NAC domain-containing protein 19
3swp_A2e-26414815143NAC domain-containing protein 19
3swp_B2e-26414815143NAC domain-containing protein 19
3swp_C2e-26414815143NAC domain-containing protein 19
3swp_D2e-26414815143NAC domain-containing protein 19
4dul_A2e-26914817140NAC domain-containing protein 19
4dul_B2e-26914817140NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913060.11e-108protein NTM1-like 9 isoform X3
TrEMBLA0A2I4F9386e-48A0A2I4F938_JUGRE; LOW QUALITY PROTEIN: NAC domain-containing protein 91-like
TrEMBLA0A2N9EGM83e-47A0A2N9EGM8_FAGSY; Uncharacterized protein
STRINGXP_008376843.14e-43(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-39NAC transcription factor-like 9