PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13361-augustus-gene-0.4-mRNA-2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LSD
Protein Properties Length: 146aa    MW: 15147.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13361-augustus-gene-0.4-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132953125
                                       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                                  C+gCr+lL YP GA+sV+Ca+C++V
  maker-scaffold13361-augustus-gene-0.4-mRNA-2 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                                                  ************************9 PP

2zf-LSD146.84.9e-156892125
                                       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                                  CggC+tlL+Y rGA+sV+C++C+tV
  maker-scaffold13361-augustus-gene-0.4-mRNA-2 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                                                  ************************9 PP

3zf-LSD141.91.7e-13106130125
                                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                                   Cg+Cr lL+Y +GA+sV+Ca+C++V
  maker-scaffold13361-augustus-gene-0.4-mRNA-2 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                                                   ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.106.0E-424127No hitNo description
TIGRFAMsTIGR010531.0E-122656IPR005735Zinc finger, LSD1-type
SuperFamilySSF486955.44E-529127IPR011031Multihaem cytochrome
PfamPF069431.4E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.8E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-12103133IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PAPAPYTPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGASASTT EQKFNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888912.11e-101protein LOL1
RefseqXP_023888913.11e-101protein LOL1
RefseqXP_023888914.11e-101protein LOL1
SwissprotQ93ZB11e-82LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS86e-94A0A2C9UHS8_MANES; Uncharacterized protein
STRINGcassava4.1_018557m9e-95(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-68lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]