PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13361-augustus-gene-0.4-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LSD
Protein Properties Length: 199aa    MW: 21343 Da    PI: 8.2005
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13361-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.62e-1382106125
                                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                                   C+gCr+lL YP GA+sV+Ca+C++V
  maker-scaffold13361-augustus-gene-0.4-mRNA-1  82 CSGCRNLLLYPVGATSVCCAVCNAV 106
                                                   ************************9 PP

2zf-LSD146.17.7e-15121145125
                                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                                   CggC+tlL+Y rGA+sV+C++C+tV
  maker-scaffold13361-augustus-gene-0.4-mRNA-1 121 CGGCHTLLMYIRGATSVQCSCCHTV 145
                                                   ************************9 PP

3zf-LSD141.22.7e-13159183125
                                       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                                   Cg+Cr lL+Y +GA+sV+Ca+C++V
  maker-scaffold13361-augustus-gene-0.4-mRNA-1 159 CGNCRMLLMYQYGARSVKCAVCNFV 183
                                                   ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF486951.09E-578180IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.6E-1279109IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-1082106IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-14118147IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-12121145IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.5E-12156186IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-12159183IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MFTNNSIPSL SLSLSLSLSF HFICYKLQRQ PKVFWQALCS NIFKCAFFSL YPEMVIPLAP  60
YPTPAPAPYT PPANGAQSQL VCSGCRNLLL YPVGATSVCC AVCNAVTAVP PPGTEMAQLV  120
CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY GARSVKCAVC  180
NFVTSVGASA STTEQKFNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888912.11e-99protein LOL1
RefseqXP_023888913.11e-99protein LOL1
RefseqXP_023888914.11e-99protein LOL1
SwissprotQ93ZB11e-82LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS82e-92A0A2C9UHS8_MANES; Uncharacterized protein
STRINGcassava4.1_018557m4e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]