PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12356-snap-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 521aa    MW: 56949.5 Da    PI: 6.3308
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12356-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-17178227155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  maker-scaffold12356-snap-gene-0.3-mRNA-1 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 227
                                               78*******************......55************************997 PP

2AP241.92.4e-13270320155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  maker-scaffold12356-snap-gene-0.3-mRNA-1 270 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 320
                                               89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-9178227IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-15178236IPR016177DNA-binding domain
CDDcd000183.31E-11179237No hitNo description
PROSITE profilePS5103217.622179235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-17179235IPR001471AP2/ERF domain
SMARTSM003809.5E-33179241IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-16270328IPR016177DNA-binding domain
PfamPF008475.8E-9270320IPR001471AP2/ERF domain
CDDcd000184.33E-24270328No hitNo description
PROSITE profilePS5103215.514271328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15271328IPR001471AP2/ERF domain
SMARTSM003805.9E-30271334IPR001471AP2/ERF domain
PRINTSPR003672.0E-5272283IPR001471AP2/ERF domain
PRINTSPR003672.0E-5310330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MLDLNLSVAS QNSGKFSGSS RMESSGTGSF NSSSGVNTTT GAVSAGGVTG GCGFAGGGGG  60
GGGDDDSTSN YDAAFGYSFS ILRKNKELDI DRGGGGGGDE EEEEDGDDCS VRNNDRTIQL  120
FPVAGDGAVS DVTGWLDLTS TFGEAAEQRI VPQQQQQQQQ QQKPLVKKSR RGPRSRSSQY  180
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFTISDYD  240
DDLRQMSNFS KDEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL  300
FDSEIEAARA YDKAAIKCNG REAVTNFEPC SYGGEIFAEA DNGEGNQSLD LQLGIALPSF  360
ADREQENENV SGFHFQHGWD DRPIDGRSRI ENSSSATVRA QLPHRPMEAS EHAPIWSGVN  420
SGFFSMYKER AMEKRTEVDS LPNWPRQIQG PYGGVTQVPL FSTAASSGFP SLTTTSPSAA  480
VGQLHFPNTT IRPPPYFANN HLHHQHIPFL LQELKQVPGR T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807836.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ8H4431e-105AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2N9IL370.0A0A2N9IL37_FAGSY; Uncharacterized protein
STRINGPOPTR_0006s13460.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]