PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11351-snap-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 548aa    MW: 59466.5 Da    PI: 5.2845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11351-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11364406754
                                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                               ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  maker-scaffold11351-snap-gene-0.3-mRNA-1 364 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 406
                                               79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16360426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9363406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.22E-13364410No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15364419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.62E-7477537No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLPRATNGVV WTEGGGGVEE EDTASWNRTS NNNEGEAHKD EDNNMGVLSG PLSSFKSMLE  60
NEWYINSALN PSHQELHLHG LPNPQDVRDI GFCPNPSDNN SLLLQPLDSS SSCSPSQAFT  120
HPFLPQKSCF SSLINAVCTN PFDNAFDLGL ETGLLGPFNP GGSASNSSAL MGFAGLSSQI  180
GGHELSSTSE FQQPTRLLPL SDNAAGLGGG FSPTGLECFD NDNSVSGSAL LLNRGKALRP  240
LEVFPQVGTQ PTLFQKRAAL RQGAEKLGNL EISDGRYGEN SEEDLEKRGR RKKKSSDECD  300
FEDGSLDVSG LNYDSDEFNE NENGFGKMEG SVRIGRSNSN ANSTVTGGGD QKGKKKGLPA  360
KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI DYLKELLQRI NDLHNELEST  420
PPGTLLPSST SFHPLTPTAP TLPSRVKEEL CPSSLPSPKS QPTRVEVRVR EGRAVNIHMF  480
CARRPGLLLS TMRALDNLGL DIQQAVISCF NGFALDVFRA EQCREGQDVL PEQIKAVLLD  540
SAGFHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353371KKKGLPAKNLMAERRRRKK
2365372ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275711.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-155ICE1_ARATH; Transcription factor ICE1
TrEMBLS4WVT00.0S4WVT0_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-141bHLH family protein