PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09518-snap-gene-0.7-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 334aa    MW: 37527.7 Da    PI: 10.211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09518-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30267324359
                                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               D y+WrKYGqK++kgs++pr+YYrC+   gCp++k+vers edp+++++tYe eHnh+
  maker-scaffold09518-snap-gene-0.7-mRNA-1 267 DDYSWRKYGQKPIKGSPHPRGYYRCSNMkGCPARKHVERSLEDPSMLIVTYECEHNHS 324
                                               99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-14218263IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-32254324IPR003657WRKY domain
PROSITE profilePS5081129.78260326IPR003657WRKY domain
SuperFamilySSF1182901.7E-26263324IPR003657WRKY domain
SMARTSM007746.3E-37265325IPR003657WRKY domain
PfamPF031067.6E-27267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGVEKTNNA AVEKCHRFLS LLCQPNDRTQ RKSLMVQTEE VVLMFQRVVS VLDSGLEHRR  60
VRKSKMFETS LPQHIFLDSP HTGTILSPKP PIVLPTNRSE NPIQEMDSKS RNSLQPSQNK  120
VPPNISKPKP SQSIQFPQQQ IQIVHFQPPQ RNFQTDNYSR SNSGTCLTFD GSTQAPTMSS  180
TRFIPSLSID GSDANSSDNS FHLIGMPRLP NQIPKDPRTK CSGRVEGGSV KCGSIATCHC  240
SKKRQPRLRK TIKVPAISNK VADIPGDDYS WRKYGQKPIK GSPHPRGYYR CSNMKGCPAR  300
KHVERSLEDP SMLIVTYECE HNHSRLLSSQ SAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202613231071WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15864RRVRKSK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911042.10.0probable WRKY transcription factor 74
RefseqXP_023911043.10.0probable WRKY transcription factor 74
SwissprotQ93WU61e-97WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2N9ET341e-150A0A2N9ET34_FAGSY; Uncharacterized protein
STRINGVIT_14s0081g00560.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-95WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]