PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07271-snap-gene-0.9-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 527aa    MW: 57786.7 Da    PI: 5.1723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07271-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11344386754
                                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                               ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  maker-scaffold07271-snap-gene-0.9-mRNA-1 344 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 386
                                               79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16340407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9343386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-12344390No hitNo description
Gene3DG3DSA:4.10.280.105.0E-15344398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.56E-6457517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MLSRANGNVW MDDTEDPDSA SWAKTNNNNN NSSSNKEEMV SLSSFKSMLE MEDEWYNINL  60
ANNSLQSHTD MGGLTFSSSL PDPESLLLNP VDSSSSCSPS SSVFTNFDPS QVHYFLHPKP  120
TLSSLINTLP SNPGFDFGCE VGFLEPQATN TLANRGVGGL SNFTDLGSNS QINSPNLCIE  180
PQFQTNRLLN LPETGSSSGF AGFKGFEENS GNALFLNRAK LLRPLESFPS VGAQPTLFQK  240
RAALRKNLEE SGANLEISKA VEVDKGKREM GEENERKRKL SVGDDIDDVS FDGSGLNYDS  300
DDFLENEKAE MNVKNGGNSS NGNSTVTVGE QKGKKKGLPA KNLMAERRRR KKLNDRLYML  360
RSVVPKISKM DRASILGDAI DYLKELLQRI NDLHIELEST PPGTALTPTT SFHPLTPTPA  420
TLPSHIKEEL CPSSLPSPNG QAARVEVRLR EGRAVNIHMF CGRRPGLLLS TMRAMDNLGL  480
DIQQAVISCF NGFAMDIFRA EQCKEGQDVH PDQIKAVLLD SAGFHNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333351KKKGLPAKNLMAERRRRKK
2345352ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038116.10.0Inducer of CBF expression 1
SwissprotQ9LSE21e-140ICE1_ARATH; Transcription factor ICE1
TrEMBLF2YGR30.0F2YGR3_9R
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-136bHLH family protein