PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06955-augustus-gene-0.10-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 146aa    MW: 15924.4 Da    PI: 7.3911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06955-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-114260826
                                                   GGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                                                   f+++tG+Ck+G++CkF+H+
  maker-scaffold06955-augustus-gene-0.10-mRNA-1 42 FYMKTGECKFGENCKFHHP 60
                                                   9*****************8 PP

2zf-CCCH443.8e-1491114427
                                                    ---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                                    +lC+++++tGtCk+G++CkF H+p
  maker-scaffold06955-augustus-gene-0.10-mRNA-1  91 VLCPYYLKTGTCKFGATCKFDHPP 114
                                                    79********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.533861IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0844262IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-94260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-54263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-54260IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-887114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.30587115IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1191114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-792112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSILCLVHTG SGQTLDPISS SLHMPCLKAV LSSLQISYFQ SFYMKTGECK FGENCKFHHP  60
IDRSAPSLLK QAQQQAVKLT LAGLPRREGA VLCPYYLKTG TCKFGATCKF DHPPPGEVMA  120
MATSQGTSAA VEGDEKEVEL LQEQQQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903185.13e-67zinc finger CCCH domain-containing protein 37-like isoform X1
RefseqXP_023903186.11e-68zinc finger CCCH domain-containing protein 37-like isoform X2
SwissprotQ941Q34e-39C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2N9H9N56e-57A0A2N9H9N5_FAGSY; Uncharacterized protein
STRINGXP_010260864.11e-48(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.19e-35floral homeotic protein (HUA1)