![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold06937-snap-gene-0.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 367aa MW: 41116.5 Da PI: 5.0071 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.6 | 3.4e-18 | 285 | 318 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG++y++ + maker-scaffold06937-snap-gene-0.11-mRNA-1 285 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 318 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.1E-76 | 24 | 366 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.385 | 279 | 315 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.6E-14 | 279 | 333 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-14 | 282 | 342 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 283 | 316 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.17E-15 | 284 | 341 | No hit | No description |
Pfam | PF00320 | 4.7E-16 | 285 | 318 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 285 | 310 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MEYCVDVRAL KSSLRREILP MKPTTQVFED FRASIGVASD DFPVDDLLDL SNAEFEDGYF 60 VENEEEEEEE EKDFLSVSSS QDDENSNSNS NSNSYNFSGT SESEFTLASG LAVPDDDLAG 120 LEWVSHFVDD SISEFSLFYP VGKQKIEANA MDRSEPESRP VLDRASCLPL EVPFPSKARS 180 KRSRTSNRVW SLPSSRFWDS NPSSPREEDQ AVLLDHKTLN FYDTSSLSSS GSCSSGLSSS 240 PRFFSGLPSS PSVFTMFNFV EPAKKKQKKK PAVQTGSGTQ FQRRCSHCQV QKTPQWRTGP 300 LGAKTLCNAC GVRYKSGRLF PEYRPACSPT FSGEIHSNSH RKVLEMRKRK EVVPEPESRL 360 NQMVSSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236855.1 | 1e-101 | PREDICTED: GATA transcription factor 5-like | ||||
Refseq | XP_008236856.1 | 1e-101 | PREDICTED: GATA transcription factor 5-like | ||||
TrEMBL | D9ZIZ0 | 4e-98 | D9ZIZ0_MALDO; GATA domain class transcription factor | ||||
STRING | POPTR_0009s12620.1 | 1e-96 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-43 | GATA transcription factor 5 |