PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06867-augustus-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 562aa    MW: 62189.3 Da    PI: 6.557
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06867-augustus-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-12242298155
                                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  maker-scaffold06867-augustus-gene-0.3-mRNA-1 242 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 298
                                                   78*******************433.44555535555.779999**************98 PP

2AP246.59.2e-15343392355
                                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                   y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  maker-scaffold06867-augustus-gene-0.3-mRNA-1 343 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 392
                                                   9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.31E-19242308No hitNo description
PfamPF008474.8E-9242298IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15242308IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-12243307IPR001471AP2/ERF domain
PROSITE profilePS5103217.332243306IPR001471AP2/ERF domain
SMARTSM003806.0E-23243312IPR001471AP2/ERF domain
PRINTSPR003671.3E-6244255IPR001471AP2/ERF domain
CDDcd000181.16E-24341402No hitNo description
SuperFamilySSF541719.81E-18341402IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-18342400IPR001471AP2/ERF domain
PROSITE profilePS5103219.137342400IPR001471AP2/ERF domain
SMARTSM003802.1E-34342406IPR001471AP2/ERF domain
PfamPF008471.8E-9343392IPR001471AP2/ERF domain
PRINTSPR003671.3E-6382402IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDDGFG RDTHQDHGAF PPHLSVMPLR SDGSLCVAAD PFRRSNVADD  60
WRYEHAMSAT NPDEDGPKLE DFLGCCYSNS APDETKVYCQ TQEDQSQSNN NISKINVNIA  120
PNNFNTNGEI DSGDNNLTTP SPLLQPYNQF NETTQALMTS SGMYKSWLGQ TPFSDEKSST  180
HPNGCGFQSL ALTMSPSAEN DIGAISPLQV VADHTRKRAV SKCLAREPVP RKSIDTFGQR  240
TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQGGYD KEEKAARAYD LAALKYWGPT  300
THINFPISTY EKELEEMKNM TRQEFVANLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG  360
RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGTSAVTNFD ISRYDVKRIC SSSTLIAGDL  420
AKRSPKDSAP AAIEDYNSCA PSTPQPLLAI TSNEPSDELV DMVWTNNNNN ERQQHENANT  480
NGDAALLASS SRNSSNPGSP KCSFGPSSEF GVGGAGDYSH PYFSLQGSKY EDGNSGNEHG  540
DANRLGNLAM VHQVPMFALW NE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023909036.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-143AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2N9G3R70.0A0A2N9G3R7_FAGSY; Uncharacterized protein
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-138AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]