PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06646-augustus-gene-0.12-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 203aa    MW: 23312.3 Da    PI: 10.2614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06646-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.91.4e-21149653128
                                            NAM  53 aeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy. 109
                                                    ++ +  +fF++ +k+y+tg+rk+r+++      + +W++tgk+++v++ +g+++g kk+Lv+y 
  maker-scaffold06646-augustus-gene-0.12-mRNA-1  14 KDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWHKTGKTRPVFV-GGAVKGYKKILVLYt 76 
                                                    444556******************744446555788************.9*************6 PP

                                            NAM 110 .kgrapkgektdWvmheyrl 128
                                                      gr++k+ekt+Wvmh+y+l
  maker-scaffold06646-augustus-gene-0.12-mRNA-1  77 nYGRQRKPEKTNWVMHQYHL 96 
                                                    6589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.2331115IPR003441NAC domain
SuperFamilySSF1019412.88E-2414115IPR003441NAC domain
PfamPF023657.0E-82096IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MYGIFLFVIT RVSKDGQIRH FFHRPSKAYT TGTRKRRKVH TDEDGSETRW HKTGKTRPVF  60
VGGAVKGYKK ILVLYTNYGR QRKPEKTNWV MHQYHLGNNE EEKDGELVVS KVFYQTQPRQ  120
CGSSIKDSLN NQSVHDNSPN EIPIPKNPTA LLEYYNTPFI NYDQGGHNRE SPPQLIPNLV  180
VQGDGSSFVR LAADTSKGKF ERK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899812.11e-137NAC domain-containing protein 10-like
SwissprotF4HY612e-70NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A2N9G7P61e-120A0A2N9G7P6_FAGSY; Uncharacterized protein
STRINGEOY281521e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.17e-73NAC domain containing protein 10