PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06601-snap-gene-0.7-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 685aa    MW: 75820.7 Da    PI: 6.9782
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06601-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-12323379155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  maker-scaffold06601-snap-gene-0.7-mRNA-1 323 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 379
                                               78*******************77776664346655.77******************98 PP

2AP245.61.8e-14424473355
                                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  maker-scaffold06601-snap-gene-0.7-mRNA-1 424 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 473
                                               9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-9323379IPR001471AP2/ERF domain
CDDcd000189.57E-19323387No hitNo description
SuperFamilySSF541712.35E-14323389IPR016177DNA-binding domain
PROSITE profilePS5103217.359324387IPR001471AP2/ERF domain
SMARTSM003809.9E-23324393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12324388IPR001471AP2/ERF domain
PRINTSPR003675.5E-6325336IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17422482IPR016177DNA-binding domain
CDDcd000182.51E-24422483No hitNo description
SMARTSM003801.2E-33423487IPR001471AP2/ERF domain
PROSITE profilePS5103219.177423481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18423481IPR001471AP2/ERF domain
PfamPF008473.0E-9424473IPR001471AP2/ERF domain
PRINTSPR003675.5E-6463483IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MKSMNDNSGS NNNWLGFSLS PHMKMEVPSD PQQQHQYHHH QQGQASSAAV SSAPPSTSYY  60
LNTPAGICYL VGENAGFHSP LSVMPLKSDG SLCIMEALTR SQPEGMVPSS SPKLEDFLGG  120
ASMGTHEYGT HEREAMALSL DSIYYNQNAE AETNREHSLG LLQEPYRQQE QHIPVQTHPY  180
YTGLHCHGIY QTPLEDESKQ THIADCDSQI PHMAEDGIPS FKNWVARQYS AAHHALEQQM  240
NGNIADDNGA SASVNAMGCG DLQSLSLSMS PGSQSSCVTA PRQISPTGAE CVAIETKKRG  300
PGKVGHKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQGGY  360
DMEEKAARAY DLAALKYWGP STHINFPLEN YQSELEEMKN MSRQEYVAHL RRKSSGFSRG  420
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF  480
DITRYDVERI MASNTLLAGE LARRNKDTDS RTEAIDYNPP MHNGGEANQT ENGNGNGNSS  540
DWKMALYQST QQQQQQQQQQ HPHPHACVES LDHQKSVNYR NPSFSMALQD LIGIDSVNSS  600
QAMVDDSSKF ATHFSNPSSL VTSLSSSREP SPDKTGSTML FAKPPSASKF ISPANGVSSW  660
FQSPQLRPTA ISMSHLPVFA AWTDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872648.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-152CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2N9F1V10.0A0A2N9F1V1_FAGSY; Uncharacterized protein
STRINGEOY156530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]