PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06450-augustus-gene-0.17-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 254aa    MW: 28858.4 Da    PI: 9.5594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06450-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51141381128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 
                                                    lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e y+Fs+r
  maker-scaffold06450-augustus-gene-0.17-mRNA-1  14 LPPGFRFHPTDEELVVQYLKRKVFSYPLPA-SIIPEVDVCKFDPWDLPGD---LEQERYYFSTR 73 
                                                    79****************************.89***************54...46799****** PP

                                            NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                                    + ky++g+r+nrat sgyWkatg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyr
  maker-scaffold06450-augustus-gene-0.17-mRNA-1  74 EAKYPNGNRSNRATGSGYWKATGIDKQIVTSrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYR 137
                                                    ***************************999857778***************************9 PP

                                            NAM 128 l 128
                                                    +
  maker-scaffold06450-augustus-gene-0.17-mRNA-1 138 F 138
                                                    6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-6010173IPR003441NAC domain
PROSITE profilePS5100557.3714173IPR003441NAC domain
PfamPF023653.4E-2615137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSYP LPASIIPEVD VCKFDPWDLP  60
GDLEQERYYF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTSRGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRFVT AETSPSNAPQ KKTSTESSVV PMENWVLCRI FLKKRSNKSE  180
DDNVQTGNEN TVGKLRTTKP VFYDFMTKGR TDLNVAPASS SSGSSGITEV SSNESDDHEE  240
SSSCNSFPYF RRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-541217815170NO APICAL MERISTEM PROTEIN
1ut4_B8e-541217815170NO APICAL MERISTEM PROTEIN
1ut7_A8e-541217815170NO APICAL MERISTEM PROTEIN
1ut7_B8e-541217815170NO APICAL MERISTEM PROTEIN
3swm_A9e-541217818173NAC domain-containing protein 19
3swm_B9e-541217818173NAC domain-containing protein 19
3swm_C9e-541217818173NAC domain-containing protein 19
3swm_D9e-541217818173NAC domain-containing protein 19
3swp_A9e-541217818173NAC domain-containing protein 19
3swp_B9e-541217818173NAC domain-containing protein 19
3swp_C9e-541217818173NAC domain-containing protein 19
3swp_D9e-541217818173NAC domain-containing protein 19
4dul_A8e-541217815170NAC domain-containing protein 19
4dul_B8e-541217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882156.11e-177NAC domain-containing protein 83-like
SwissprotQ9FY931e-105NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2N9I3D41e-166A0A2N9I3D4_FAGSY; Uncharacterized protein
STRINGcassava4.1_014491m1e-161(Manihot esculenta)
STRINGcassava4.1_014492m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-102NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]