PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05544-augustus-gene-0.8-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 308aa    MW: 34016.1 Da    PI: 5.8776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05544-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.7e-33166223259
                                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                   +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp++v++tYeg+H h+
  maker-scaffold05544-augustus-gene-0.8-mRNA-1 166 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPTIVITTYEGQHCHH 223
                                                   8******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-34150224IPR003657WRKY domain
SuperFamilySSF1182902.62E-28157223IPR003657WRKY domain
PROSITE profilePS5081129.826160225IPR003657WRKY domain
SMARTSM007742.3E-38165224IPR003657WRKY domain
PfamPF031067.4E-26166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEEGDKSDPG TEFASWPHDS DNVYFFANNN RGSGGGGSDD TTILSEFGWN LRPENDDPNR  60
IGGLDDDSSD FTRSFVFPDQ NKDTTGSALQ SSDPVVPSGS ESKAGDATTS NNPSVSSTSS  120
EDPPEKSTDS GGKPPEIPNK VRKKGQKRIR QPRFAFMTKS EVDHLEDGYR WRKYGQKAVK  180
NSPFPRSYYR CTNSKCTVKK RVERSSDDPT IVITTYEGQH CHHTIGFPRG GIISQEAFAG  240
HLAPPISQFY YPTVHHQLPQ ENPFFITQTR QTPGEAAGES RVMPQTNAQP PTDEGLLGDI  300
VPPNMRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25155222774Probable WRKY transcription factor 4
2lex_A2e-25155222774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316097.21e-115hypothetical protein POPTR_0010s16760g
SwissprotQ9C9832e-78WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLB9HXK91e-115B9HXK9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16760.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-72WRKY DNA-binding protein 57