PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05230-augustus-gene-0.10-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 85aa    MW: 9871.7 Da    PI: 6.6108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05230-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-053961223
                                                   EETTTTEEESSHHHHHHHHHH.T CS
                                        zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                                   +C+ C  +Fs++ +L++H +  H
  maker-scaffold05230-augustus-gene-0.10-mRNA-1 39 ECNLCQNVFSNSTELQTHRQQsH 61
                                                   6*****************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035539933IPR015880Zinc finger, C2H2-like
SMARTSM003550.0533861IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.993866IPR007087Zinc finger, C2H2
PROSITE patternPS0002804061IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MENNNDNEFT CCHCHRIFFN SLNDFRDHNT VAHAYYRVEC NLCQNVFSNS TELQTHRQQS  60
HQPQPPPPAP APQQQQQQQA AHPQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-