PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05135-augustus-gene-0.5-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 349aa    MW: 37775.2 Da    PI: 9.9738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05135-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31277334359
                                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                   D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  maker-scaffold05135-augustus-gene-0.5-mRNA-1 277 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYEGDHNHS 334
                                                   9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-17228273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-33265334IPR003657WRKY domain
PROSITE profilePS5081130.182270336IPR003657WRKY domain
SuperFamilySSF1182901.44E-26273334IPR003657WRKY domain
SMARTSM007742.4E-37275335IPR003657WRKY domain
PfamPF031067.1E-27277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVNGVWEIMA VELMMGYGGD SFAGKSSEEN ALAVKEAASA GIQSVEKLMR LISQEQASME  60
VGAVADVAVD KFKRVISLLD RKRLGHARFR RAPVGASPQQ KQESQEVQEP GPSNIPVPHR  120
QKLGPVSAFK VYCPTPTPIS RLPPLPNSHT HVHQQPLGLM VAKAGSLERK DGANSINFCS  180
SPPISAGNSF VSSLTGDTES LQPSLSSGFQ ITNLSQVSSV GKPPLSLKRR CSSMDDGALK  240
CGSSSGRCHC SKKRKTKIKR VIRVPAISPK MADIPPDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSLRGCPAR KHVERALDDP TMLIVTYEGD HNHSHTISEA NTALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20263333271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910552.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-104WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2N9GY340.0A0A2N9GY34_FAGSY; Uncharacterized protein
STRINGEOY143801e-150(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-97WRKY DNA-binding protein 7