PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04558-snap-gene-0.13-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 320aa    MW: 37311.6 Da    PI: 8.309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04558-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-064869223
                                               EETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                               +C+ Cg +F+ + +Lk+H+++H
  maker-scaffold04558-snap-gene-0.13-mRNA-1 48 TCQECGATFTKPAYLKQHMQSH 69
                                               6*******************99 PP

2zf-C2H2193.7e-067599123
                                               EEET..TTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                               y+Cp  dC+ s++rk++L+rH+  H
  maker-scaffold04558-snap-gene-0.13-mRNA-1 75 YTCPvdDCHSSYRRKDHLTRHLLQH 99
                                               9********************9887 PP

3zf-C2H216.42.5e-05104129123
                                                EEET..TTTEEESSHHHHHHHHHH.T CS
                                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                                +kCp  +Cg  Fs + n++rH +  H
  maker-scaffold04558-snap-gene-0.13-mRNA-1 104 FKCPieNCGHEFSYQGNMTRHVNEfH 129
                                                89*******************99888 PP

4zf-C2H216.22.9e-05213237223
                                                EET..TTTEEESSHHHHHHHHHH.T CS
                                    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                                kC+   C  +Fs+ksnL++Hi+  H
  maker-scaffold04558-snap-gene-0.13-mRNA-1 213 KCHydGCLHTFSTKSNLHQHIKAvH 237
                                                79*******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-74568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.17E-104699No hitNo description
PROSITE profilePS5015712.054774IPR007087Zinc finger, C2H2
SMARTSM003550.0044769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-1169101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00327599IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82775104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807799IPR007087Zinc finger, C2H2
SuperFamilySSF576675.77E-685148No hitNo description
Gene3DG3DSA:3.30.160.609.5E-5102126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.655104134IPR007087Zinc finger, C2H2
SMARTSM003550.014104129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106129IPR007087Zinc finger, C2H2
SMARTSM0035523154179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156179IPR007087Zinc finger, C2H2
SMARTSM0035515182203IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.14E-7195249No hitNo description
PROSITE profilePS5015711.011212242IPR007087Zinc finger, C2H2
SMARTSM003550.048212237IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-5212237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4238266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.2243269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517243272IPR007087Zinc finger, C2H2
PROSITE patternPS000280245269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDEMGEIEKP IFRDIRRYYC EYCGICRKRW KRIRLMGEEE KEGKKSNTCQ ECGATFTKPA  60
YLKQHMQSHS VERLYTCPVD DCHSSYRRKD HLTRHLLQHQ GKLFKCPIEN CGHEFSYQGN  120
MTRHVNEFHS KDCPPISAEP QKQFVCQEIG CGKALCCEPG CMKYFSNDEC LKAHIQSCHQ  180
HITCEICGTK QLRRNIKRHL QIHEDTVSLE RVKCHYDGCL HTFSTKSNLH QHIKAVHLEL  240
KPFACSFTGC GVRFAHKHVR DKHEKTGCHV HTTGDFEESD EQFQSRIRGG RKRKCPTVEM  300
LIRKRISPPS PPSQSDEESD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A4e-114326618183Aart
2i13_B4e-114326618183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920458.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-115TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2N9IQ501e-170A0A2N9IQ50_FAGSY; Uncharacterized protein
STRINGEMJ252291e-158(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-115transcription factor IIIA