PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04103-augustus-gene-0.16-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 325aa    MW: 36977.2 Da    PI: 8.8002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04103-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.7e-51191492128
                                            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFsk 63 
                                                     pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk    + +++ewyfF++
  maker-scaffold04103-augustus-gene-0.16-mRNA-1  19 LPGFRFHPTDEELVAFYLRRKVDKKTISM-ELIKQIDIYKHDPWDLPKasGSTVKDTEWYFFCR 81 
                                                    59***************************.99***************6333344888******* PP

                                            NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmh 124
                                                    r +ky+++ r+nr+t sg+Wkatg dk+v+s+   ++  +glkktLv+y+g+a +g+ktdW+mh
  maker-scaffold04103-augustus-gene-0.16-mRNA-1  82 RGRKYRNSIRPNRVTGSGFWKATGIDKPVYSTggeGRDCIGLKKTLVYYRGTAGNGSKTDWMMH 145
                                                    *******************************96554555************************* PP

                                            NAM 125 eyrl 128
                                                    e+rl
  maker-scaffold04103-augustus-gene-0.16-mRNA-1 146 EFRL 149
                                                    **98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-5416186IPR003441NAC domain
PROSITE profilePS5100553.17518186IPR003441NAC domain
PfamPF023652.1E-2620149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKMSNKGTS QLEDDVDQLP GFRFHPTDEE LVAFYLRRKV DKKTISMELI KQIDIYKHDP  60
WDLPKASGST VKDTEWYFFC RRGRKYRNSI RPNRVTGSGF WKATGIDKPV YSTGGEGRDC  120
IGLKKTLVYY RGTAGNGSKT DWMMHEFRLP APTDTNTNTN TNAKLDNAKS TAQEAEIWTL  180
CRIFKRNLSH RKYTPDWREL STKRHQADTS SKACSGESSN NRESYINFGA PFIFQNEHNN  240
EIKTVNRINN ESNQLHVGQL SSSIAQPPSS SSIAQPPSSS SITKLPSSSL SFPINPVPDA  300
NEFFAYENWD ELRSVVEFAY DPSLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47111927171NO APICAL MERISTEM PROTEIN
1ut4_B1e-47111927171NO APICAL MERISTEM PROTEIN
1ut7_A1e-47111927171NO APICAL MERISTEM PROTEIN
1ut7_B1e-47111927171NO APICAL MERISTEM PROTEIN
3swm_A1e-471119210174NAC domain-containing protein 19
3swm_B1e-471119210174NAC domain-containing protein 19
3swm_C1e-471119210174NAC domain-containing protein 19
3swm_D1e-471119210174NAC domain-containing protein 19
3swp_A1e-471119210174NAC domain-containing protein 19
3swp_B1e-471119210174NAC domain-containing protein 19
3swp_C1e-471119210174NAC domain-containing protein 19
3swp_D1e-471119210174NAC domain-containing protein 19
4dul_A1e-47111927171NAC domain-containing protein 19
4dul_B1e-47111927171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926837.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2N9FTZ11e-158A0A2N9FTZ1_FAGSY; Uncharacterized protein
STRINGcassava4.1_024488m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-84NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]