PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04069-snap-gene-0.18-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 189aa    MW: 21618.4 Da    PI: 4.5485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04069-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.58.7e-2681161128
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkky 68 
                                                lppGf+F Ptdeelv ++L +k++  +++  ++i+++d++ ++Pw+++  +                 
  maker-scaffold04069-snap-gene-0.18-mRNA-1   8 LPPGFHFCPTDEELVLHFLLRKASLLPCHP-DIIPDLDLCLHDPWEFN-GI----------------- 56 
                                                79*************************999.99**************7.22................. PP

                                        NAM  69 atgkrknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                                 ++  +n +tk+gyW + g  d++++++ g++vg+kk Lvfy g+ap g++tdW+m+ey+l
  maker-scaffold04069-snap-gene-0.18-mRNA-1  57 -NKVTENWITKNGYWMELGIiDEPIVTSAGNKVGIKKYLVFYIGEAPGGVETDWIMQEYHL 116
                                                .2234577999********8799************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-365146IPR003441NAC domain
PROSITE profilePS5100525.9528147IPR003441NAC domain
PfamPF023653.7E-169116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGDGSVNLPP GFHFCPTDEE LVLHFLLRKA SLLPCHPDII PDLDLCLHDP WEFNGINKVT  60
ENWITKNGYW MELGIIDEPI VTSAGNKVGI KKYLVFYIGE APGGVETDWI MQEYHLCNHD  120
LRGALHNRRG KRKIDCSKWV LCRVYERKGN FAQWLCNSDD EDNGTELSSP DEMFLSAIDD  180
EFDDTSFPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-28515014168NO APICAL MERISTEM PROTEIN
1ut4_B1e-28515014168NO APICAL MERISTEM PROTEIN
1ut7_A1e-28515014168NO APICAL MERISTEM PROTEIN
1ut7_B1e-28515014168NO APICAL MERISTEM PROTEIN
3swm_A1e-28515017171NAC domain-containing protein 19
3swm_B1e-28515017171NAC domain-containing protein 19
3swm_C1e-28515017171NAC domain-containing protein 19
3swm_D1e-28515017171NAC domain-containing protein 19
3swp_A1e-28515017171NAC domain-containing protein 19
3swp_B1e-28515017171NAC domain-containing protein 19
3swp_C1e-28515017171NAC domain-containing protein 19
3swp_D1e-28515017171NAC domain-containing protein 19
4dul_A1e-28515014168NAC domain-containing protein 19
4dul_B1e-28515014168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914281.11e-133NAC domain-containing protein 104-like
SwissprotQ8GWK64e-51NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2N9J5M81e-101A0A2N9J5M8_FAGSY; Uncharacterized protein
STRINGVIT_04s0044g01500.t014e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-53xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]