PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04058-augustus-gene-0.21-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 539aa    MW: 56320 Da    PI: 8.5935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04058-augustus-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056183123
                                                   EEETTTTEEESSHHHHHHHHHHT CS
                                        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                   ++C++C+k F r  nL+ H r H
  maker-scaffold04058-augustus-gene-0.21-mRNA-1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                                                   89*******************88 PP

2zf-C2H211.10.0012137159123
                                                    EEETTTTEEESSHHHHHHHHHHT CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                    +kC +C+k +  +s+ k H + +
  maker-scaffold04058-augustus-gene-0.21-mRNA-1 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                                                    58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.64E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355280102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.64E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MPVDLDNSST ASGEASVSSS GNQSQPPKPT AKKKRSLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEQSCV HHDPTRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAQTQPV ANPNSESDTK IQAVDSSPPT PAPAPAPTPA PAQAQAQAQA  240
QAQAQAQAQA QAQAQAQAQA PPAPPQPQSS GVISSVLPIK SPELPENQTQ IVEETPVTTG  300
LNGSCSSTTS SSSNGSTSCS VFANLFASST ASASLQTPQT HGFSDLIRAM AARPDPPTDL  360
ARPPSTEPIS LCLSTNHGSS IFGTAGQERR QYAPPPQPAM SATALLQKAA QMGAAATNAS  420
LLRGFGIVSS SSSSGQQDGL HWSQRQVEPD NASVPPGLGL GLHCDGGSGL KELMMGTPVF  480
GPKQTTLDFL GLGMAAGGST NSGLSALITS IGGGLDVAAA AAASFGGGEF TGKDIGRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34133197367Zinc finger protein JACKDAW
5b3h_F6e-34133197367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928867.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLK9P0T00.0K9P0T0_9ROSI; Zinc finger protein
STRINGevm.model.supercontig_158.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]