PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03973-snap-gene-0.12-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 429aa    MW: 48271 Da    PI: 7.6216
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03973-snap-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.84.4e-36461881128
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyf 60 
                                                lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +f
  maker-scaffold03973-snap-gene-0.12-mRNA-1  46 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHF 111
                                                799************.99*********5553344444434666646**********.555666799** PP

                                        NAM  61 Fskrdkkyatgkrknratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgek 118
                                                F++ +k+y+tg+rk+r+++        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ek
  maker-scaffold03973-snap-gene-0.12-mRNA-1 112 FHRPSKAYTTGTRKRRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEK 178
                                                ****************73334555544778************.999***********5547999999* PP

                                        NAM 119 tdWvmheyrl 128
                                                t+Wvmh+y+l
  maker-scaffold03973-snap-gene-0.12-mRNA-1 179 TNWVMHQYHL 188
                                                ********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3842207IPR003441NAC domain
PROSITE profilePS5100533.0146207IPR003441NAC domain
PfamPF023652.0E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNKSSLGSIS SSDLIDAKLE EHQMCGSKHC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA TTGEGNSDLN SRRDSGSGSS  240
SSKEVVPHRD EMSAAGVAPI SGYSAIDIQQ LKSDHFSFAP LRKSFDEVGM AEASTAREAP  300
ASGTCEELRD HQRPHPMAHE HHHQQQQHHH AHHQLATTAF HISRPSHPIS TIISPPPLHH  360
TSIILDQDPY NVPRIMLQNE NFQQQQQQQQ QQQHHKLGGR SASGLEELIM GCTSTNIKEG  420
EKKEKVNKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134418813140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921089.10.0NAC domain-containing protein 75-like isoform X2
SwissprotQ9M0F81e-180NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2N9IKT30.0A0A2N9IKT3_FAGSY; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-139NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]