PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03184-snap-gene-0.22-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 362aa    MW: 39661.6 Da    PI: 6.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03184-snap-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.3e-07164185223
                                                EETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                                 C++Cgk F+r  nL+ H+r H
  maker-scaffold03184-snap-gene-0.22-mRNA-1 164 FCEICGKGFKRDANLRMHMRAH 185
                                                6*******************99 PP

2zf-C2H211.80.00077262278521
                                                TTTEEESSHHHHHHHHH CS
                                    zf-C2H2   5 dCgksFsrksnLkrHir 21 
                                                 Cg+sFsrk+ L  H+ 
  maker-scaffold03184-snap-gene-0.22-mRNA-1 262 TCGTSFSRKDKLFGHMT 278
                                                6**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.64E-6160188No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5162186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.591163190IPR007087Zinc finger, C2H2
SMARTSM003550.0015163185IPR015880Zinc finger, C2H2-like
PfamPF128740.002164183No hitNo description
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SMARTSM0035546193226IPR015880Zinc finger, C2H2-like
SMARTSM0035513231253IPR015880Zinc finger, C2H2-like
SMARTSM00355230259283IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MFNTGESYRI PAGYSAGLGH NPGQNRVGSS DSRVPLLNLS TVRTRMDSLQ RFLSDTVNRN  60
HLISQDQMDM VSTEIVSAIH QIIVNGAALL SCSQTSDLTA AAAPAEIATP SSTTPPKLAA  120
DSSVPLKVEA SDSDDFKVEN SFLDSDSEIV ELDAVELLAE HIHFCEICGK GFKRDANLRM  180
HMRAHGNHRH TKFSCPYDGC NRNKSHKKFR PLKSVICVKN HFKRSHCPKM YSCNRCNKKS  240
FSVVADLKNH LKHCGEARWK CTCGTSFSRK DKLFGHMTLF EGHMPAVGGD DNECPKIAPD  300
SSAAVTAMEE DDEEVVMGSG SGSDNGLLFD GLLDDFGGSI ESYYCFQDML GSPQLNGMEL  360
NL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892361.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2N9IY990.0A0A2N9IY99_FAGSY; Uncharacterized protein
STRINGPOPTR_0007s05340.11e-136(Populus trichocarpa)
STRINGcassava4.1_009526m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.26e-69C2H2 family protein