PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02946-augustus-gene-0.17-mRNA-2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 295aa    MW: 33990.1 Da    PI: 7.7309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02946-augustus-gene-0.17-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063150174123
                                                    EEETTTTEEESSHHHHHHHHHH..T CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                                                    + C  C+k ++  ++++ H+++  H
  maker-scaffold02946-augustus-gene-0.17-mRNA-2 150 FYCDLCNKQYKLAMEFEAHLSSydH 174
                                                    78*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004438.2E-185398IPR000467G-patch domain
PROSITE profilePS5017416.35755100IPR000467G-patch domain
PfamPF015851.0E-155696IPR000467G-patch domain
PfamPF121711.6E-5150177IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSARDKQHHE KEQAYRDSLI EDLADDFRLP INHRLTENVD LDNVEQASLD TQLTSSNIGF  60
RLLQKMGWKG KGLGKDEQGI IEPIRSGIRD PKLGVGKQEQ DDFFTAEENI QRRKLDVEVE  120
ETEEHAKKRE VLAEREQKIQ IEVKEIRKVF YCDLCNKQYK LAMEFEAHLS SYDHNHRKIF  180
SVLKKMREMH GSSSRDDRQK REQQRQEREM AKFAQIENAR KQQQLQQQQE DSGSAPVPTE  240
VKVATALTDQ EPRKVLKFGF SSKGGTSKNS FGSAAKKKPK VAVASVFGND SDEEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875215.10.0G patch domain-containing protein 8
TrEMBLA0A2N9EHY50.0A0A2N9EHY5_FAGSY; Uncharacterized protein
STRINGXP_004302330.11e-166(Fragaria vesca)