PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02784-augustus-gene-0.30-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 192aa    MW: 22024.9 Da    PI: 4.6894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02784-augustus-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1332.1e-41131311128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 
                                                    lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r
  maker-scaffold02784-augustus-gene-0.30-mRNA-1  13 LPPGFRFCPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLDGKALAEGNKWYFYSRR 75 
                                                    79*************************999.99**************977778899******98 PP

                                            NAM  65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                                             +nr+t +gyWka g++++v++++++ vg+kk+Lvfy+g+ap+g kt+W+m+eyrl
  maker-scaffold02784-augustus-gene-0.30-mRNA-1  76 T--------QNRVTCNGYWKAMGNEEPVMNSSSKCVGMKKILVFYTGEAPSGIKTSWIMQEYRL 131
                                                    4........58***************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-509162IPR003441NAC domain
PROSITE profilePS5100547.14313163IPR003441NAC domain
PfamPF023653.5E-2414131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLYKIMGDNN VNLPPGFRFC PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLDG  60
KALAEGNKWY FYSRRTQNRV TCNGYWKAMG NEEPVMNSSS KCVGMKKILV FYTGEAPSGI  120
KTSWIMQEYR LSDSAGSTSR SSKRRGNPKI DYSTWVICRV YERDEDDDGT ELSCLDEVFL  180
SLDDLDEISL PI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-42916413166NO APICAL MERISTEM PROTEIN
1ut4_B4e-42916413166NO APICAL MERISTEM PROTEIN
1ut7_A4e-42916413166NO APICAL MERISTEM PROTEIN
1ut7_B4e-42916413166NO APICAL MERISTEM PROTEIN
3swm_A4e-42916416169NAC domain-containing protein 19
3swm_B4e-42916416169NAC domain-containing protein 19
3swm_C4e-42916416169NAC domain-containing protein 19
3swm_D4e-42916416169NAC domain-containing protein 19
3swp_A4e-42916416169NAC domain-containing protein 19
3swp_B4e-42916416169NAC domain-containing protein 19
3swp_C4e-42916416169NAC domain-containing protein 19
3swp_D4e-42916416169NAC domain-containing protein 19
4dul_A4e-42916413166NAC domain-containing protein 19
4dul_B4e-42916413166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879962.11e-135NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK63e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2I4GDM61e-103A0A2I4GDM6_JUGRE; NAC domain-containing protein 104 isoform X1
STRINGVIT_12s0055g00510.t011e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-74xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]