PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02656-augustus-gene-0.15-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 379aa    MW: 44135.4 Da    PI: 6.9594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02656-augustus-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.8e-5671361129
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfF 61 
                                                    +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++  ++ + e++ewyfF
  maker-scaffold02656-augustus-gene-0.15-mRNA-1   7 VPPGFRFHPTDEELVDYYLRKKISSRRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFF 69 
                                                    69****************************.9***************954555442556***** PP

                                            NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                                                    s++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mhe
  maker-scaffold02656-augustus-gene-0.15-mRNA-1  70 SHKDKKYPTGTRTNRATTAGFWKATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHE 132
                                                    *********************************.8899************************** PP

                                            NAM 126 yrle 129
                                                    yrle
  maker-scaffold02656-augustus-gene-0.15-mRNA-1 133 YRLE 136
                                                    **85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-595176IPR003441NAC domain
PROSITE profilePS5100558.4147176IPR003441NAC domain
PfamPF023651.4E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIS SRRIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETEEN GTPQANLERK TANHLVHFQF AFWQEEGWVV CRVFKKRIAT  180
VRKVNEQGSP CWYDDQVSFM PDLDSPKHNS QSNLAYQLPY CKKELDLVPY HAPHDHFLQL  240
PLLESPKLLQ SAPTISSNSL APYVIDINHA TTLQSSSLSR EEQIQHQPHE QNFYVAYANN  300
NCNEQAVDQV TDWRVLDKFV ASQLSHEDAS KQISYSTGTN NIYHTSNSTN VFVRRMDKQE  360
MVPESVSMSS SSGQIELWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-48613514140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895276.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-141NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2N9HYR30.0A0A2N9HYR3_FAGSY; Uncharacterized protein
STRINGVIT_16s0022g00690.t010.0(Vitis vinifera)
STRINGEOY229090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-119NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]