PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02441-augustus-gene-0.13-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 364aa    MW: 40349.7 Da    PI: 6.4269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02441-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-30131192159
                                                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+v+eitY+g+H++ 
  maker-scaffold02441-augustus-gene-0.13-mRNA-1 131 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPNVFEITYRGRHTCA 192
                                                    59***************************98999**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.215126189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-29128193IPR003657WRKY domain
SuperFamilySSF1182904.05E-26130193IPR003657WRKY domain
SMARTSM007741.4E-42131193IPR003657WRKY domain
PfamPF031062.4E-27132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDNMGDWEQK NLINELAQGM ELARQLQIHL NVPSSSHEAR EFLVEKILSS YEKALSMLNM  60
SSSVSEPQAI GGAILRMSES PPSLTGSPRS EDSDRELKDQ EQRDASRKRK TLPRWTRQVR  120
INPGVGLEGP LDDGFSWRKY GQKDILGAKY PRGYYRCTHR NVQGCLATKQ VQRSDEDPNV  180
FEITYRGRHT CAQASATHTL PAPASPEKHE PINSRNPAQL QSLQPQQTQQ PSQEMLLNFR  240
EALKVQTENL DTAHHYQQPF PSFGFPAAAS TSSAKVENQV LPDSLIDNNF VGSFSPSFMS  300
SATSGTNYFT VSPTGANSFG VHQNLQTSES AATSTKNSPI AALAFPFDQE FDPNFTFGSS  360
GFFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20131191868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899975.10.0probable WRKY transcription factor 53
TrEMBLA0A2N9EN191e-158A0A2N9EN19_FAGSY; Uncharacterized protein
STRINGPOPTR_0012s01380.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-63WRKY family protein