PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02428-augustus-gene-0.19-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 165aa    MW: 18371 Da    PI: 6.7686
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02428-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.62.9e-4561051100
                                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 
                                                    +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvye
  maker-scaffold02428-augustus-gene-0.19-mRNA-1   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYE 69 
                                                    7*************************************************************** PP

                                         DUF260  65 AearardPvyGavgvilklqqqleqlkaelallkee 100
                                                    A+arardPvyG+vg i+ lq+q++ql+ +la++++e
  maker-scaffold02428-augustus-gene-0.19-mRNA-1  70 ANARARDPVYGCVGAISFLQNQVSQLQMQLAVAQAE 105
                                                    ********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9275106IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-446103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGGNSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRA  60
DAVSSLVYEA NARARDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQQEPVMPTP  120
QMDPDDKSSY LFHDSLPQYL NFSSSSNVIH DSFKRESIFG HDMVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435806.11e-107hypothetical protein CICLE_v10032929mg
RefseqXP_006486261.11e-107PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW37e-76LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A067FN821e-107A0A067FN82_CITSI; Uncharacterized protein
TrEMBLV4TH271e-107V4TH27_9R
STRINGPOPTR_0010s19180.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-77LBD family protein