PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02294-augustus-gene-0.23-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 115aa    MW: 12879.9 Da    PI: 8.3875
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02294-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.53.4e-3661061101
                                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 
                                                    +CaaC  lrr+C kdCvlapyfp ++p++fa+vhk+FGasn++k+l++lp + r  a+ ++ +e
  maker-scaffold02294-augustus-gene-0.23-mRNA-1   6 RCAACESLRRRCRKDCVLAPYFPPTNPQRFACVHKIFGASNITKMLEQLPLHLRAVAAVCMSFE 69 
                                                    6*************************************************************** PP

                                         DUF260  65 AearardPvyGavgvilklqqqleqlkaelallkeel 101
                                                    A  r++d vyG+vg+i++lq+q+ ++++el+++k+e+
  maker-scaffold02294-augustus-gene-0.23-mRNA-1  70 ASSRVEDSVYGSVGIISQLQEQIIEAQSELVKTKNEI 106
                                                    ********************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.85106IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-356103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MSHSTRCAAC ESLRRRCRKD CVLAPYFPPT NPQRFACVHK IFGASNITKM LEQLPLHLRA  60
VAAVCMSFEA SSRVEDSVYG SVGIISQLQE QIIEAQSELV KTKNEIAFHN AQQQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-34710612111LOB family transfactor Ramosa2.1
5ly0_B2e-34710612111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892503.13e-70LOB domain-containing protein 24-like
SwissprotP594683e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2K1YZY88e-58A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRINGXP_010278070.19e-55(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-44LOB domain-containing protein 24