PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02174-snap-gene-0.23-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 265aa    MW: 30028.9 Da    PI: 7.5532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02174-snap-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015116133118
                                                EEETTTTEEESSHHHHHH CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkr 18 
                                                ++C+ C k+F+r  nL+r
  maker-scaffold02174-snap-gene-0.23-mRNA-1 116 FSCHVCLKTFNRYNNLQR 133
                                                89**************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKPFEISLSI NPLASSSSSS DHTDTELLNL FLSMDQNSLD PHSSLSNLPS WPTVLMEENP  60
KACSDDHEDV TLALNIGFPN HSSGSIDANT METANIAANN YWTPTLEQIH IGFTHFSCHV  120
CLKTFNRYNN LQRGRFVEGK STTTHVRHSM LYYCAEGCKN NISHSRAKPL KDRDFRTLQT  180
HYKRIHGMKN FECCQCGKLL AMKGDWRTHE KNCGKRWLCV CSSDFKDKKS LKDHIKGFGS  240
GHSPYPPTFE GFDEVLKDTS PFIFV
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914530.11e-143protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG36e-67TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A2N9EYG11e-111A0A2N9EYG1_FAGSY; Uncharacterized protein
STRINGEOY159714e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-60C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]