PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01789-snap-gene-0.35-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 303aa    MW: 33817.8 Da    PI: 6.506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01789-snap-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.4e-30191581128
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk......kvkaee 55 
                                                lppG+rFhP+++elv++yL++k ++ +        +  + i+e+++++++P +Lp        + +++
  maker-scaffold01789-snap-gene-0.35-mRNA-1  19 LPPGCRFHPSQHELVSYYLANKNRDPDpnpdenfSNGYDLIRELNLFDYDPFELPDdtcfsyGFGGRK 86 
                                                79*********************99986665554333458**************95467766555588 PP

                                        NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkge.ktdW 121
                                                ++wy +++++++     r++r+tk+gyWk  gk ++v+   ++ +vg +k++vfy g++p++  +t+W
  maker-scaffold01789-snap-gene-0.35-mRNA-1  87 RHWYCYCCSSSS---RIRSRRKTKNGYWKRNGKVRDVVGPcGRVQVGSRKSFVFYLGNSPETAfRTSW 151
                                                8*******9886...4699*******************9978889**********998877655**** PP

                                        NAM 122 vmheyrl 128
                                                v+ ey+l
  maker-scaffold01789-snap-gene-0.35-mRNA-1 152 VLYEYAL 158
                                                *****87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3415174IPR003441NAC domain
PROSITE profilePS5100536.41319174IPR003441NAC domain
PfamPF023652.5E-1920158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGDPIPSTQK LKPTTSFSLP PGCRFHPSQH ELVSYYLANK NRDPDPNPDE NFSNGYDLIR  60
ELNLFDYDPF ELPDDTCFSY GFGGRKRHWY CYCCSSSSRI RSRRKTKNGY WKRNGKVRDV  120
VGPCGRVQVG SRKSFVFYLG NSPETAFRTS WVLYEYALLD HPKASFVVCR VFSKSRAGNS  180
ISDNGLSSCA EESISAVRHI GTQHDGYLTS DTVEAKIQGD NSVDGNNEIP RYPKQLGSKL  240
EDQIMTGPVS VASLPFPSVM QPRELVSSTG LPGSGSMFVE GLTDQQLSSI LEEGFIELND  300
LMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-1991797170NO APICAL MERISTEM PROTEIN
1ut4_B1e-1991797170NO APICAL MERISTEM PROTEIN
1ut7_A1e-1991797170NO APICAL MERISTEM PROTEIN
1ut7_B1e-1991797170NO APICAL MERISTEM PROTEIN
3swm_A1e-19918010174NAC domain-containing protein 19
3swm_B1e-19918010174NAC domain-containing protein 19
3swm_C1e-19918010174NAC domain-containing protein 19
3swm_D1e-19918010174NAC domain-containing protein 19
3swp_A1e-19918010174NAC domain-containing protein 19
3swp_B1e-19918010174NAC domain-containing protein 19
3swp_C1e-19918010174NAC domain-containing protein 19
3swp_D1e-19918010174NAC domain-containing protein 19
4dul_A1e-1991797170NAC domain-containing protein 19
4dul_B1e-1991797170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881636.10.0NAC domain-containing protein 71-like
RefseqXP_023881637.10.0NAC domain-containing protein 71-like
TrEMBLA0A2N9IDY51e-119A0A2N9IDY5_FAGSY; Uncharacterized protein
STRINGEMJ256971e-105(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.29e-24NAC domain containing protein 38