PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01717-augustus-gene-0.29-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 1126aa    MW: 121289 Da    PI: 4.4002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01717-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00144365123
                                                   EEETTTTEEESSHHHHHHHHHHT CS
                                        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                   ++C +Cg +F++++   rH r H
  maker-scaffold01717-augustus-gene-0.29-mRNA-1 43 HVCRKCGWPFPNPHPSARHRRAH 65
                                                   79******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    Send to blast
MGYGLSVANA ASLKGTDSST YQSPDPPKKK TFITSRLEGH GVHVCRKCGW PFPNPHPSAR  60
HRRAHKRICG TIEGYKLVDS EGNPHLNVSD DEHSDDDHKP PSPKVVEPSN IAKDIRGIGE  120
RSNRSENEVF SDAVAEFSDS GTNSGVEEPL KNAQEPATNV EKVAKDDPSI NKSLKDGGIA  180
EIIEPPSLSS ESSQTGNPEV PESIVNQLRT SPDFEDHVST FTVSSKASSF SDCIAEESVM  240
HSYDGKNSPS DSNNVKPETL TDASQESEKI SASEDVIECR LASVVQEPDT KGTEETKLDR  300
NLMASMVSPS RFAGKSFELV SKSEVTEGKT SDPAPDDTVV HTGEEHDGGS SSKMSQNDLT  360
PEVDSADHVN AATDTFQLKV DAAHVVKDLA SSGDIIESGN KKEEGNYSLD VLPVLDDSSD  420
HVNASIDTSQ INVIAAEGIH SANSGKISES CNKKEETNEN ENVNVLSVLD DTSILDPPAI  480
MVEDFKDNKG VKLHEYASLD SCATIMDKED ANGSASEEQY SSFQLRQLNE GAEVPSAAIL  540
VLDDSGDLNG SSVAVVNEVL VEEEADVSQV KLTINEKEVP AEAVITDMEE NHTVQSHEVP  600
ETHDICNDAL QVNFPENAME LSSDAVINQA TNLVGGDDAG NCEKAMNEKL DGIGDNTGKS  660
VSEENYTKIS GKIFESIGNP FESPVYPTIK LPEGDEAGDH EKGKIQKYDV DGIQIKDESK  720
EHLSMKTKLF SESASSLHES QTVADNKMDG SVKKLPEHEC MDFDGVYLSR VGKNSFSDTG  780
IKKDEINGNE VEVKSIGGST ANESYHGGHV NSLQKTSGDD MTKESNPSHL DSESSFQSSA  840
AVDENHAREF GVGASGITSE SLEGDSNFVK QQVAASAIDV SVDSSSQTDS LEGHWGSVSV  900
LSTQSDAAVV IDAEAFPSYH SQASAKAEKG SLEKPREAAE EQQHSEKSDM FEAPSFMTLV  960
ESRDGIDQKA AASEIQMGEN SQQQSASLQA GWFPSLTHVV NESQGRKKNE EIIAKVTNWS  1020
TGKQHTPLKT LLGEASLETK SKSPRPKENP APAIQKDETL PKDNGAFATT VNTILGPESP  1080
TNEAAKSQAK KEWNSPARYP SEIKREKRKV KGRPYWVQFV CCSSMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927705.10.0uncharacterized protein LOC112039093 isoform X1
TrEMBLA0A2N9EK700.0A0A2N9EK70_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50511719