PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01684-snap-gene-0.33-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 432aa    MW: 48832.5 Da    PI: 6.5786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01684-snap-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.1e-50181741128
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................... 49 
                                                lppGfrFhPtdeel+++yL+ kv +  +     i+evd++++ePw+Lp+                   
  maker-scaffold01684-snap-gene-0.33-mRNA-1  18 LPPGFRFHPTDEELITFYLASKVFNGAFCG-VEIAEVDLNRCEPWELPEkrkreeklnvcvfsssllt 84 
                                                79*************************777.45**************95589**************** PP

                                        NAM  50 ..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
                                                           +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktL
  maker-scaffold01684-snap-gene-0.33-mRNA-1  85 cicwfvflidVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsSGALLGMKKTL 152
                                                ****9999986666999*************************************9978889******* PP

                                        NAM 107 vfykgrapkgektdWvmheyrl 128
                                                vfykgrap+gekt+Wvmheyrl
  maker-scaffold01684-snap-gene-0.33-mRNA-1 153 VFYKGRAPRGEKTKWVMHEYRL 174
                                                ********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-181379IPR003441NAC domain
PROSITE profilePS5100556.54218196IPR003441NAC domain
PfamPF023658.7E-2719174IPR003441NAC domain
SuperFamilySSF1019417.59E-4092196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEDVLRELAG EEINERGLPP GFRFHPTDEE LITFYLASKV FNGAFCGVEI AEVDLNRCEP  60
WELPEKRKRE EKLNVCVFSS SLLTCICWFV FLIDVAKMGE REWYFFSLRD RKYPTGLRTN  120
RATGAGYWKA TGKDREVYSA SSGALLGMKK TLVFYKGRAP RGEKTKWVMH EYRLDGDFSY  180
RHTCKEEWVI CRIFHKAGEK KNSLFQGQSY LLEAASSPTS GSLPPLLETP TTTLLECQSQ  240
NSMQDLQNHF LINQQENDLK SLINPVVSQS HLFPINGFQV QPSLSPIPTT ITSSTTVATN  300
KNTDTTNNPS PSPLPSMLFK SLLSHQECTF KEHVTIQKQC KTEGNFSHFQ LPAEANLQWM  360
MDRTLPNTYQ NQNPLLFQID CGLLGLSALA SAPTTDATGH EMSTSIAFNR AGFQLMLDTP  420
MRIHGESWPL DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-451519912171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4481486e-82AM448148.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X222766.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023877866.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-104NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2N9EJM80.0A0A2N9EJM8_FAGSY; Uncharacterized protein
STRINGEOY159120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-95NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]