PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01636-snap-gene-0.46-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 183aa    MW: 21056.1 Da    PI: 9.9449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01636-snap-gene-0.46-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.41.1e-43101641125
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................... 49 
                                                +p+GfrFhPtdeelv++yL+ k+eg++ ++ ++i+ev+++k+eP+dL k                   
  maker-scaffold01636-snap-gene-0.46-mRNA-1  10 MPVGFRFHPTDEELVSHYLRLKMEGNDSQV-HIIPEVNVCKWEPSDLAKtlrknekeekkkgvfvmkg 76 
                                                699************************999.89**************856899*************** PP

                                        NAM  50 ...........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkkt 105
                                                            +k++++ew+fFs+rd k+++++r+nratksgyWk tgkd++++++ +++++g+kkt
  maker-scaffold01636-snap-gene-0.46-mRNA-1  77 lalfhdcaefsVIKSDDQEWFFFSPRDFKSSNSNRTNRATKSGYWKVTGKDRKIKARgTNNVIGTKKT 144
                                                *****9999987888999**************************************967778****** PP

                                        NAM 106 LvfykgrapkgektdWvmhe 125
                                                Lvf++gr ++g++t+Wvmhe
  maker-scaffold01636-snap-gene-0.46-mRNA-1 145 LVFHRGRVRDGVRTSWVMHE 164
                                                *******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-44655IPR003441NAC domain
PROSITE profilePS5100542.33610183IPR003441NAC domain
PfamPF023652.2E-2611164IPR003441NAC domain
SuperFamilySSF1019411.09E-4483170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTSIEGMESM PVGFRFHPTD EELVSHYLRL KMEGNDSQVH IIPEVNVCKW EPSDLAKTLR  60
KNEKEEKKKG VFVMKGLALF HDCAEFSVIK SDDQEWFFFS PRDFKSSNSN RTNRATKSGY  120
WKVTGKDRKI KARGTNNVIG TKKTLVFHRG RVRDGVRTSW VMHECQPTVT LPHQVDGVHV  180
KCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-33516610139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885011.16e-96protein NTM1-like 9
RefseqXP_023894735.16e-96protein NTM1-like 9
SwissprotF4JN351e-52NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2N9H8V12e-69A0A2N9H8V1_FAGSY; Uncharacterized protein
STRINGPOPTR_0001s45700.11e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-55NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]